Suffolk County is a geographic entity with no county-level government or building department; all permitting, zoning, and code enforcement are handled exclusively by the individual cities of Boston, Chelsea, Revere, and Winthrop. There is no county-wide regulatory overlay, though coastal municipalities are subject to state-level Wetlands Protection Act regulations.
How this fits with the state
The state authority here is Massachusetts Office of Public Safety and Inspections; local building departments. The county file does not replace that — it adds the permit office, local overlays, and the actual filing path.